Search found 6 matches
[phpBB Debug] PHP Warning: in file [ROOT]/vendor/twig/twig/lib/Twig/Extension/Core.php on line 1275: count(): Parameter must be an array or an object that implements Countable- Wed Mar 11, 2009 7:55 pm
- Forum: Visualization
- Topic: Visualization of the membrane
- Replies: 4
- Views: 38221
Re: Visualization of the membrane
To use the script, open the tcl window and do the following commands: source GBSWmemb GBSWmemb <tmemb value> <msw value> the hydrophobic core value and interface value should use the same values that you'd use for GBIM or GBSW in charmm code. For example, if you had a 35 tmemb (core) value and 2.5 m...
- Wed Mar 11, 2009 7:49 pm
- Forum: Visualization
- Topic: Visualization of the membrane
- Replies: 4
- Views: 38221
Re: Visualization of the membrane
The simplest ways to "view" an implicit bilayer in VMD is to use the draw commands or create a pdb file with points and then do a trace of those. Below is a quick tcl script for the VMD to draw an implicit bilayer. If any errors occur just rename GBSWmemb to a command not used in VMD and that should...
- Fri Oct 10, 2008 6:47 pm
- Forum: Feature requests
- Topic: Error message request
- Replies: 0
- Views: 22450
Error message request
This program is super! There is only one small feature request that I think might benefit new users. If we could have an error message appear when the syntax isn't correct for the 'mode' command that would be great. I was using the manual's syntax for: 'mode Transrot scan' and couldn't figure out wh...
- Thu Oct 09, 2008 5:05 am
- Forum: Bugs
- Topic: Novice assistance
- Replies: 6
- Views: 39626
Re: Novice assistance
Many thanks Martin and Jakob.
The issue was definitely the CPU and CPU flags. I installed a new CPU with SSE2 on the Linux computer and now executing hippo is no longer an issue!
Many thanks again!
The issue was definitely the CPU and CPU flags. I installed a new CPU with SSE2 on the Linux computer and now executing hippo is no longer an issue!
Many thanks again!
- Wed Oct 08, 2008 2:00 pm
- Forum: Bugs
- Topic: Novice assistance
- Replies: 6
- Views: 39626
Re: Novice assistance
I used the standard input file that came with the program first but I still got the same error. When that happened I decided to take a minimalist approach and put only a few commands in the script. It's good to know that in the future I can't do that. The CPU's that I'm working with are: vendor_id :...
- Mon Oct 06, 2008 9:17 pm
- Forum: Bugs
- Topic: Novice assistance
- Replies: 6
- Views: 39626
Novice assistance
This is probably a stupid problem so please bear with me as I'm a novice when it comes to Hippo. I downloaded both the Windows and Linux version of Hippo and am having difficulty running the executable file. I get the same error for both versions "Illegal instruction". I'm not sure what this means. ...