Search found 18 matches
- Sat Oct 18, 2008 6:34 pm
- Forum: Installation
- Topic: "Installing" Hippo BETA r26
- Replies: 0
- Views: 21659
"Installing" Hippo BETA r26
The package comes as a zip file with precompiled static binaries. The current I/O interface of hippo is very simple: It expects all its input files in the current directory. Thus, one typically makes a working directory, copies files (such as hippo_input.txt, pdbs, *.dat) into this directory and cop...
- Sat Oct 18, 2008 6:26 pm
- Forum: Announcements
- Topic: Release of Hippo BETA Rev 26
- Replies: 0
- Views: 23115
Release of Hippo BETA Rev 26
Binaries for Hippo BETA are publicly available at www.biowerkzeug.com . Currently, executables for Linux and Windows are available; note that these will only run on the x86 CPU architecture (all modern Intel and AMD cpus). The zip file contains precompiled executables for Linux and Windows the manua...
- Sat Oct 18, 2008 6:13 pm
- Forum: Bugs
- Topic: Novice assistance
- Replies: 6
- Views: 39727
Re: Novice assistance
Thanks, the new binaries (revision 26) work well (tested on Linux). The hippo and hippo_mpi binaries work on modern dual cores (with SSSE3) whereas the hippo_p3 and hippo_p3_mpi one work on older processors. If in doubt, just try them out in order and take the first one that works. I also put notes ...
- Wed Aug 27, 2008 8:27 pm
- Forum: Running simulations
- Topic: MC steps and MD simulation time
- Replies: 5
- Views: 15523
Re: MC steps and MD simulation time
That's a very good question. I don't think it has a simple answer.... I am looking forward to further replies .
- Wed Aug 06, 2008 7:10 pm
- Forum: Bugs and feature requests
- Topic: general "How To" forum?
- Replies: 0
- Views: 37012
general "How To" forum?
Would it be better if there was a Hippo forum dedicated to How To documents? At the moment the idea is to post questions/answers/HowTos/... under the appropriate forum. E.g. if there's a problem with running Hippo then this would go under Hippo ? Running Simulations . Similarly, guides and recipes s...
- Sat Jul 05, 2008 12:04 am
- Forum: Other Biomolecular Simulation communities
- Topic: CHARMM
- Replies: 0
- Views: 39188
CHARMM
www.charmm.org CHARMM forums CHARMM (Chemistry at HARvard Macromolecular Mechanics): is a versatile and widely used molecular simulation program with broad application to many-particle systems has been developed with a primary focus on the study of molecules of biological interest, including peptid...
- Fri Jul 04, 2008 11:52 pm
- Forum: Other Biomolecular Simulation communities
- Topic: GROMACS
- Replies: 0
- Views: 21204
GROMACS
www.gromacs.org Mailing lists (subscription and access to archives) GROMACS Wiki GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like ...
- Wed Jul 02, 2008 12:26 am
- Forum: Molecular simulation package advocacy
- Topic: List of Molecular Dynamics packages
- Replies: 0
- Views: 36717
List of Molecular Dynamics packages
A non-exhaustive list of Molecular dynamics (MD) packages... please add your own. See also Wiki:Molecular Dynamics codes . Freely* available for academics, including source code: Hippo * (see also the Hippo forum ). Gromacs * CHARMM LAMMPS * [url=ttp://www.ks.uiuc.edu/Research/namd/]NAMD[/url]* Ambe...