Discussions on how to set up simulations, typically starting from a pdb file.
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sitiazma - Posts:11
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cutoff
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by sitiazma » Tue Sep 22, 2009 2:54 pm
Hi
I want to study interaction between 2 helices. As an example, I want to put both helices of GpA with 10 A distance to each other. My objective here is to get the helices to come in contact. Do I need to edit any cutoff in the input file?
Thanks
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martin - Developer
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by martin » Tue Sep 22, 2009 2:58 pm
You can set the cutoff to infinity by setting use_cutoff to zero.
Hope this helps,
Best wishes,
Martin
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