biowerkzeug

Other Biomolecular Simulation communities
Let everyone else know about the native community for you favourite Biomolecular Simulation package. Use one topic per package.

Force fields
How and when to use a particular force field? Why would you choose one force field over the other? What are the merits, what are the caveats?

Molecular simulation package advocacy
Tell us why you like to use package X for running biomolecular simulations. What are the advantages? What would you improve or would you like to have ported from another package Y into X?

Analysis
Discuss methods to obtain meaningful observables from simulation trajectories. You can share scripts or just ideas and links to other communities are very welcome, too. For Hippo-specific analysis have a look at the Hippo -> Analysis forum.

Visualization
How to display biomolecules in motion: from rasmol to Alias Wavefront.