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This forum is used by developers and staff to announce important news about Hippo.

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Sun Dec 07, 2008 8:59 pm

oliver

How to compile and install Hippo. You can also report architectures (hardware and operating system) on which you managed to get Hippo running and discuss tuning options for performance.

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Sat Oct 18, 2008 6:34 pm

oliver

Discussions on how to set up simulations, typically starting from a pdb file.

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Thu Oct 01, 2009 4:27 pm

martin

You successfully prepared your system. Now: How do I tell Hippo to produce a trajectory from it? What parameters to choose? And what should I do when things go wrong.

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Thu Oct 20, 2011 2:13 pm

martin

After a successful calculation you want more than just to see the atoms wiggle: Here you can discuss how to use Hippo to compute observables from the simulation. For more general discussions on analysis of simulations see also the Molecular Simulations -> Analysis forum.

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Wed Jun 17, 2009 4:52 pm

m.kalavera

Discussions about the force fields implemented in Hippo. For general force field discussions see Molecular Simulations -> Force fields.

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Thu Nov 13, 2008 11:53 am

kaihsu

Please report bugs and crashes. Read the first post about reporting bugs, please. Depending on volume we may later switch to a dedicated bug tracking system.

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Sat Oct 18, 2008 6:13 pm

oliver

What would you like to see implemented in Hippo? Let the developers know. You can also use polls to have other users vote for your suggestions. Use one topic per request.

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Sun Jun 28, 2009 12:55 pm

niki

Let everyone else know about the native community for you favourite Biomolecular Simulation package. Use one topic per package.

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Sat Jul 05, 2008 12:04 am

oliver

How and when to use a particular force field? Why would you choose one force field over the other? What are the merits, what are the caveats?

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Sun Jan 10, 2010 1:52 pm

oliver

Tell us why you like to use package X for running biomolecular simulations. What are the advantages? What would you improve or would you like to have ported from another package Y into X?

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Wed Jul 02, 2008 12:26 am

oliver

Discuss methods to obtain meaningful observables from simulation trajectories. You can share scripts or just ideas and links to other communities are very welcome, too. For Hippo-specific analysis have a look at the Hippo -> Analysis forum.

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Thu Jun 18, 2009 1:47 pm

m.kalavera

How to display biomolecules in motion: from rasmol to Alias Wavefront.

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Tue Oct 06, 2009 3:09 pm

oliver

Discussions about the biowerkzeug Wiki.

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Wed Jul 28, 2010 1:01 pm

oliver

Discussions about the biowerkzeug forum (the one you are currently reading).

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Wed Aug 06, 2008 7:10 pm

oliver

The place for off-topic discussions but please refrain from profanity, vulgarity and advertisements. Discussing the best place to drink beer in Oxford is ok, though.

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Wed Nov 12, 2008 3:33 pm

kaihsu

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